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Soil respiration that releases CO 2 into the atmosphere roughly balances the net primary productivity and varies widely in space and time. However, predicting its spatial variability, particularly in intensively managed landscapes, is challenging due to a lack of understanding of the roles of soil organic carbon (SOC) redistribution resulting from accelerated soil erosion. Here we simulate the heterotrophic carbon loss (HCL)—defined as microbial decomposition of SOC—with soil transport, SOC surface redistribution, and biogeochemical transformation in an agricultural field. The results show that accelerated soil erosion extends the spatial variation of the HCL, and the mechanical-mixing due to tillage further accentuates the contrast. The peak values of HCL occur in areas where soil transport rates are relatively small. Moreover, HCL has a strong correlation with the SOC redistribution rate rather than the soil transport rate. This work characterizes the roles of soil and SOC transport in restructuring the spatial variability of HCL at high spatio-temporal resolution.